Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

3 May 2019

Abstract excerpt

OBJECTIVES: Sample preparation for high-throughput sequencing (HTS) includes treatment with various laboratory components, potentially carrying viral nucleic acids, the extent of which has not been thoroughly investigated. Our aim was to systematically examine a diverse repertoire of laboratory components used to prepare samples for HTS in order to identify contaminating viral sequences. METHODS: A total of 322...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Animal Virus Infections Studies
Share to Bacteriophages and microbial interactions
Share to Polyomavirus and related diseases

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 31059795
DOI: 10.1016/j.cmi.2019.04.028

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing librariesPMID 31059795Read ↗

Comparison of Nucleic Acid Extraction Methods for a Viral Metagenomics Analysis of Respiratory VirusesSemantic proximity Read ↗

Metagenomic identification of viral sequences in laboratory reagentsSemantic proximity Read ↗

Cont-ID: Detection of samples cross-contamination in viral metagenomic dataSemantic proximity Read ↗

The Human “Contaminome”: Bacterial, Viral, and Computational Contamination in Whole Genome Sequences from 1,000 FamiliesSemantic proximity Read ↗

Next-generation sequencing in clinical virology: Discovery of new virusesSemantic proximity Read ↗

Negativeome in Early-Life Virome Studies: Characterization and DecontaminationSemantic proximity Read ↗

Contamination Issue in Viral Metagenomics: Problems, Solutions, and Clinical PerspectivesSemantic proximity Read ↗

Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome AnalysisSemantic proximity Read ↗

Potential Applications of Human Viral Metagenomics and Reference Materials: Considerations for Current and Future VirusesSemantic proximity Read ↗

Comprehensive Human Virus Screening Using High-Throughput Sequencing with a User-Friendly Representation of Bioinformatics Analysis: a Pilot StudySemantic proximity Read ↗

A Comparison of Methods for the Optimal Recovery of the Human Fecal ViromeSemantic proximity Read ↗

Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samplesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.