Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Constraint-based modelling captures the metabolic versatility of Desulfovibrio vulgaris.

Environmental microbiology reports - 1 Apr 2018

Flowers Jason J, Richards Matthew A, Baliga Nitin, Meyer Birte, Stahl David A

Abstract excerpt

A refined Desulfovibrio vulgaris Hildenborough flux balance analysis (FBA) model (iJF744) was developed, incorporating 1016 reactions that include 744 genes and 951 metabolites. A draft model was first developed through automatic model reconstruction using the ModelSeed Server and then curated based on existing literature. The curated model was further refined by incorporating three recently proposed redox...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacterial Proteins
Share to Electron Transport
Share to Models, Biological

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Mutation

Share to Oxidation-Reduction

Share to Sulfates

Source

Identifiers

PMID: 29377633
DOI: 10.1111/1758-2229.12619

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Constraint-based modelling captures the metabolic versatility of Desulfovibrio vulgaris.PMID 29377633Read ↗

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation.Semantic proximity Read ↗

Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus.Semantic proximity Read ↗

Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.Semantic proximity Read ↗

Genome-scale constraint-based modeling of Geobacter metallireducens.Semantic proximity Read ↗

Flexibility of syntrophic enzyme systems in Desulfovibrio species ensures their adaptation capability to environmental changes.Semantic proximity Read ↗

The electron transfer system of syntrophically grown Desulfovibrio vulgaris.Semantic proximity Read ↗

A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversitySemantic proximity Read ↗

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.Semantic proximity Read ↗

Gene expression analysis of energy metabolism mutants of Desulfovibrio vulgaris Hildenborough indicates an important role for alcohol dehydrogenase.Semantic proximity Read ↗

Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus.Semantic proximity Read ↗

Unveiling abundance-dependent metabolic phenotypes of microbial communitiesSemantic proximity Read ↗

A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.