Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.

doi:10.1534/g3.117.043083

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Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.

G3 (Bethesda, Md.) - 7 Sept 2017

Oldeschulte David L, Halley Yvette A, Wilson Miranda L, Bhattarai Eric K, Brashear Wesley, Hill Joshua, Metz Richard P, Johnson Charles D, Rollins Dale, Peterson Markus J, Bickhart Derek M, Decker Jared E, Sewell John F, Seabury Christopher M

Abstract excerpt

Northern bobwhite (Colinus virginianus; hereafter bobwhite) and scaled quail (Callipepla squamata) populations have suffered precipitous declines across most of their US ranges. Illumina-based first- (v1.0) and second- (v2.0) generation draft genome assemblies for the scaled quail and the bobwhite produced N50 scaffold sizes of 1.035 and 2.042 Mb, thereby producing a 45-fold improvement in contiguity over the...

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PMID: 28717047
DOI: 10.1534/g3.117.043083
PMCID: PMC5592930

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