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Article

nala: text mining natural language mutation mentions.

Bioinformatics (Oxford, England) - 15 Jun 2017

Cejuela Juan Miguel, Bojchevski Aleksandar, Uhlig Carsten, Bekmukhametov Rustem, Kumar Karn Sanjeev, Mahmuti Shpend, Baghudana Ashish, Dubey Ankit, Satagopam Venkata P, Rost Burkhard

Abstract excerpt

MOTIVATION: The extraction of sequence variants from the literature remains an important task. Existing methods primarily target standard (ST) mutation mentions (e.g. 'E6V'), leaving relevant mentions natural language (NL) largely untapped (e.g. 'glutamic acid was substituted by valine at residue 6'). RESULTS: We introduced three new corpora suggesting named-entity recognition (NER) to be more challenging than...

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Identifiers

PMID: 28200120
DOI: 10.1093/bioinformatics/btx083
PMCID: PMC5870606

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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