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Article

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species.

Bioinformatics (Oxford, England) - 1 Dec 2015

Di Guardo Mario, Micheletti Diego, Bianco Luca, Koehorst-van Putten Herma J J, Longhi Sara, Costa Fabrizio, Aranzana Maria J, Velasco Riccardo, Arús Pere, Troggio Michela, van de Weg Eric W

Abstract excerpt

UNLABELLED: ASSIsT (Automatic SNP ScorIng Tool) is a user-friendly customized pipeline for efficient calling and filtering of SNPs from Illumina Infinium arrays, specifically devised for custom genotyping arrays. Illumina has developed an integrated software for SNP data visualization and inspection called GenomeStudio (GS). ASSIsT builds on GS-derived data and identifies those markers that follow a bi-allelic...

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PMID: 26249809
DOI: 10.1093/bioinformatics/btv446
PMCID: PMC4653386

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