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Article

Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly.

BMC genomics - 22 Jan 2015

Argyris Jason M, Ruiz-Herrera Aurora, Madriz-Masis Pablo, Sanseverino Walter, Morata Jordi, Pujol Marta, Ramos-Onsins Sebastián E, Garcia-Mas Jordi

Abstract excerpt

BACKGROUND: The genome of the melon (Cucumis melo L.) double-haploid line DHL92 was recently sequenced, with 87.5 and 80.8% of the scaffold assembly anchored and oriented to the 12 linkage groups, respectively. However, insufficient marker coverage and a lack of recombination left several large, gene rich scaffolds unanchored, and some anchored scaffolds unoriented. To improve the anchoring and orientation of the...

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Identifiers

PMID: 25612459
DOI: 10.1186/s12864-014-1196-3
PMCID: PMC4316794

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