Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.

BMC genomics - 27 Nov 2014

Routtu Jarkko, Hall Matthew D, Albere Brian, Beisel Christian, Bergeron R Daniel, Chaturvedi Anurag, Choi Jeong-Hyeon, Colbourne John, De Meester Luc, Stephens Melissa T, Stelzer Claus-Peter, Solorzano Eleanne, Thomas W Kelley, Pfrender Michael E, Ebert Dieter

Abstract excerpt

BACKGROUND: Although Daphnia is increasingly recognized as a model for ecological genomics and biomedical research, there is, as of yet, no high-resolution genetic map for the genus. Such a map would provide an important tool for mapping phenotypes and assembling the genome. Here we estimate the genome size of Daphnia magna and describe the construction of an SNP array based linkage map. We then test the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Daphnia

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Linkage

Share to Genome

Share to Genome Size

Share to Lod Score

Share to Quantitative Trait, Heritable

Share to Quantitative Trait Loci

Source

Open in PubMed Open full text

Identifiers

PMID: 25431334
DOI: 10.1186/1471-2164-15-1033
PMCID: PMC4301878

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.PMID 25431334Read ↗

The first-generation Daphnia magna linkage map.Semantic proximity Read ↗

Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna.Semantic proximity Read ↗

A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single-Sperm Whole-Genome Sequencing.Semantic proximity Read ↗

Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis.Semantic proximity Read ↗

Characterization of genome-wide SNPs for the water flea Daphnia pulicaria generated by genotyping-by-sequencing (GBS).Semantic proximity Read ↗

Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus.Semantic proximity Read ↗

An ultra-high density SNP-based linkage map for enhancing the pikeperch (Sander lucioperca) genome assembly to chromosome-scale.Semantic proximity Read ↗

Construction of a high-density linkage map and fine mapping of QTLs for growth and gonad related traits in blunt snout bream.Semantic proximity Read ↗

Genetic mapping and QTL analysis of growth-related traits in Pinctada fucata using restriction-site associated DNA sequencing.Semantic proximity Read ↗

A Dense Linkage Map of Lake Victoria Cichlids Improved the Pundamilia Genome Assembly and Revealed a Major QTL for Sex-Determination.Semantic proximity Read ↗

A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication.Semantic proximity Read ↗

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.