Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

CanvasDB: a local database infrastructure for analysis of targeted- and whole genome re-sequencing projects.

Database : the journal of biological databases and curation - 1 Jan 2014

Ameur Adam, Bunikis Ignas, Enroth Stefan, Gyllensten Ulf

Abstract excerpt

CanvasDB is an infrastructure for management and analysis of genetic variants from massively parallel sequencing (MPS) projects. The system stores SNP and indel calls in a local database, designed to handle very large datasets, to allow for rapid analysis using simple commands in R. Functional annotations are included in the system, making it suitable for direct identification of disease-causing mutations in...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Database Management Systems
Share to Databases, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Human

Share to Genomics

Share to High-Throughput Nucleotide Sequencing

Share to Internet

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 25281234
DOI: 10.1093/database/bau098
PMCID: PMC4184106

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

CanvasDB: a local database infrastructure for analysis of targeted- and whole genome re-sequencing projects.PMID 25281234Read ↗

wANNOVAR: annotating genetic variants for personal genomes via the web.Semantic proximity Read ↗

Comprehensive genome analysis and variant detection at scale using DRAGEN.Semantic proximity Read ↗

WEP: a high-performance analysis pipeline for whole-exome data.Semantic proximity Read ↗

Human variation database: an open-source database template for genomic discovery.Semantic proximity Read ↗

Seave: a comprehensive web platform for storing and interrogating human genomic variationSemantic proximity Read ↗

A survey of tools for variant analysis of next-generation genome sequencing data.Semantic proximity Read ↗

BrowseVCF: a web-based application and workflow to quickly prioritise disease-causative variants in VCF filesSemantic proximity Read ↗

DisVar: an R library for identifying variants associated with diseases using large-scale personal genetic information.Semantic proximity Read ↗

Strategies for exome and genome sequence data analysis in disease-gene discovery projects.Semantic proximity Read ↗

Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset.Semantic proximity Read ↗

Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools.Semantic proximity Read ↗

The Sentieon Genomics Tools - A fast and accurate solution to variant calling from next-generation sequence dataSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.