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Article

HaplotypeCN: copy number haplotype inference with Hidden Markov Model and localized haplotype clustering.

PloS one - 1 Jan 2014

Lin Yen-Jen, Chen Yu-Tin, Hsu Shu-Ni, Peng Chien-Hua, Tang Chuan-Yi, Yen Tzu-Chen, Hsieh Wen-Ping

Abstract excerpt

Copy number variation (CNV) has been reported to be associated with disease and various cancers. Hence, identifying the accurate position and the type of CNV is currently a critical issue. There are many tools targeting on detecting CNV regions, constructing haplotype phases on CNV regions, or estimating the numerical copy numbers. However, none of them can do all of the three tasks at the same time. This paper...

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PMID: 24849202
DOI: 10.1371/journal.pone.0096841
PMCID: PMC4029584

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