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Article

Retrieving Y chromosomal haplogroup trees using GWAS data.

European journal of human genetics : EJHG - 1 Aug 2014

Peng Min-Sheng, He Jun-Dong, Fan Long, Liu Jie, Adeola Adeniyi C, Wu Shi-Fang, Murphy Robert W, Yao Yong-Gang, Zhang Ya-Ping

Abstract excerpt

Phylogenetically informative Y chromosomal single-nucleotide polymorphisms (Y-SNPs) integrated in DNA chips have not been sufficiently explored in most genome-wide association studies (GWAS). Herein, we introduce a pipeline to retrieve Y-SNP data. We introduce the software YTool (http://mitotool.org/ytool/) to handle conversion, filtering, and annotation of the data. Genome-wide SNP data from populations in...

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Identifiers

PMID: 24281365
DOI: 10.1038/ejhg.2013.272
PMCID: PMC4350590

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