High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

doi:10.1111/pbi.12106

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Article

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

Plant biotechnology journal - 1 Dec 2013

Bekele Wubishet A, Wieckhorst Silke, Friedt Wolfgang, Snowdon Rod J

Abstract excerpt

With its small, diploid and completely sequenced genome, sorghum (Sorghum bicolor L. Moench) is highly amenable to genomics-based breeding approaches. Here, we describe the development and testing of a robust single-nucleotide polymorphism (SNP) array platform that enables polymorphism screening for genome-wide and trait-linked polymorphisms in genetically diverse S. bicolor populations. Whole-genome sequences...

Topics

Breeding
Chromosome Mapping
Gene Expression Profiling
Genetic Linkage
Genetic Markers
Genetics, Population
Genome, Plant
Genome-Wide Association Study
Genomics
Genotype
High-Throughput Nucleotide Sequencing

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Linkage Disequilibrium

Oligonucleotide Array Sequence Analysis

Phenotype

Polymorphism, Single Nucleotide

Quantitative Trait Loci

Sequence Analysis, DNA

Sorghum

Source

Open in PubMed

Identifiers

PMID: 23919585
DOI: 10.1111/pbi.12106

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