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Article

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.

BMC genomics - 6 Aug 2012

Hou Yali, Bickhart Derek M, Hvinden Miranda L, Li Congjun, Song Jiuzhou, Boichard Didier A, Fritz Sébastien, Eggen André, DeNise Sue, Wiggans George R, Sonstegard Tad S, Van Tassell Curtis P, Liu George E

Abstract excerpt

BACKGROUND: Btau_4.0 and UMD3.1 are two distinct cattle reference genome assemblies. In our previous study using the low density BovineSNP50 array, we reported a copy number variation (CNV) analysis on Btau_4.0 with 521 animals of 21 cattle breeds, yielding 682 CNV regions with a total length of 139.8 megabases. RESULTS: In this study using the high density BovineHD SNP array, we performed high resolution CNV...

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Identifiers

PMID: 22866901
DOI: 10.1186/1471-2164-13-376
PMCID: PMC3583728

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