Maize HapMap2 identifies extant variation from a genome in flux.

doi:10.1038/ng.2313

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Article

Maize HapMap2 identifies extant variation from a genome in flux.

Nature genetics - 3 Jun 2012

Chia Jer-Ming, Song Chi, Bradbury Peter J, Costich Denise, de Leon Natalia, Doebley John, Elshire Robert J, Gaut Brandon, Geller Laura, Glaubitz Jeffrey C, Gore Michael, Guill Kate E, Holland Jim, Hufford Matthew B, Lai Jinsheng, Li Meng, Liu Xin, Lu Yanli, McCombie Richard, Nelson Rebecca, Poland Jesse, Prasanna Boddupalli M, Pyhäjärvi Tanja, Rong Tingzhao, Sekhon Rajandeep S, Sun Qi, Tenaillon Maud I, Tian Feng, Wang Jun, Xu Xun, Zhang Zhiwu, Kaeppler Shawn M, Ross-Ibarra Jeffrey, McMullen Michael D, Buckler Edward S, Zhang Gengyun, Xu Yunbi, Ware Doreen

Abstract excerpt

Whereas breeders have exploited diversity in maize for yield improvements, there has been limited progress in using beneficial alleles in undomesticated varieties. Characterizing standing variation in this complex genome has been challenging, with only a small fraction of it described to date. Using a population genetics scoring model, we identified 55 million SNPs in 103 lines across pre-domestication and...

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PMID: 22660545
DOI: 10.1038/ng.2313

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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