Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Arena3D: visualizing time-driven phenotypic differences in biological systems.

BMC bioinformatics - 22 Mar 2012

Secrier Maria, Pavlopoulos Georgios A, Aerts Jan, Schneider Reinhard

Abstract excerpt

BACKGROUND: Elucidating the genotype-phenotype connection is one of the big challenges of modern molecular biology. To fully understand this connection, it is necessary to consider the underlying networks and the time factor. In this context of data deluge and heterogeneous information, visualization plays an essential role in interpreting complex and dynamic topologies. Thus, software that is able to bring the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Embryonic Stem Cells
Share to Epigenesis, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Knockdown Techniques

Share to Protein Biosynthesis

Share to Proteins

Share to Software

Share to Transcription, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 22439608
DOI: 10.1186/1471-2105-13-45
PMCID: PMC3368716

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Arena3D: visualizing time-driven phenotypic differences in biological systems.PMID 22439608Read ↗

PhenoTimer: software for the visual mapping of time-resolved phenotypic landscapes.Semantic proximity Read ↗

COMUNET: a tool to explore and visualize intercellular communicationSemantic proximity Read ↗

Visualization of Results from Systems Genetics Studies in Chromosomal Context.Semantic proximity Read ↗

Context-explorer: Analysis of spatially organized protein expression in high-throughput screensSemantic proximity Read ↗

ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-workSemantic proximity Read ↗

Finding genome-transcriptome-phenome association with structured association mapping and visualization in GenAMap.Semantic proximity Read ↗

CLARA: A web portal for interactive exploration of the cardiovascular cellular landscape in health and diseaseSemantic proximity Read ↗

An optimal transport-based low-dimensional visualization framework for high-parameter flow cytometrySemantic proximity Read ↗

Density-Preserving Data Visualization Unveils Dynamic Patterns of Single-Cell Transcriptomic VariabilitySemantic proximity Read ↗

Snapshot: clustering and visualizing epigenetic history during cell differentiationSemantic proximity Read ↗

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis.Semantic proximity Read ↗

Quantitative determination of changes in the spatial distribution of components in single cells with CellDetailSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.