Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine.

Molecular ecology resources - 1 May 2012

Lesser Mark R, Parchman Thomas L, Buerkle C Alex

Abstract excerpt

With the advent of next generation sequencing technologies, transcriptome level sequence collections are arising as prominent resources for the discovery of gene-based molecular markers. In a previous study more than 15,000 simple sequence repeats (SSRs) in expressed sequence tag (EST) sequences resulting from 454 pyrosequencing of Pinus contorta cDNA were identified. From these we developed PCR primers for...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to DNA Primers
Share to Genotype
Share to Molecular Typing

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymerase Chain Reaction

Share to Polymorphism, Genetic

Share to Transcriptome

Source

Identifiers

PMID: 22171820
DOI: 10.1111/j.1755-0998.2011.03102.x

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine.PMID 22171820Read ↗

Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs.Semantic proximity Read ↗

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.Semantic proximity Read ↗

Comparative transcriptomics of a complex of four European pine species.Semantic proximity Read ↗

Development of a single nucleotide polymorphism array for population genomic studies in four European pine species.Semantic proximity Read ↗

Cross-species transferability of EST-SSR markers developed from the transcriptome of Melilotus and their application to population genetics research.Semantic proximity Read ↗

Cross-amplification and sequence variation of microsatellite loci in Eurasian hard pines.Semantic proximity Read ↗

In silico mining for simple sequence repeat loci in a pineapple expressed sequence tag database and cross-species amplification of EST-SSR markers across Bromeliaceae.Semantic proximity Read ↗

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata).Semantic proximity Read ↗

Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana).Semantic proximity Read ↗

Development and Transferability of EST-SSR Markers for Pinus koraiensis from Cold-Stressed Transcriptome through Illumina Sequencing.Semantic proximity Read ↗

Genetic Diversity and Population Structure of Whitebark Pine (Pinus albicaulis Engelm.) in Western North America.Semantic proximity Read ↗

Genomic Identity of White Oak Species in an Eastern North American SyngameonSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.