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Article

Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease.

BMC bioinformatics - 17 Sept 2009

South Brett R, Shen Shuying, Jones Makoto, Garvin Jennifer, Samore Matthew H, Chapman Wendy W, Gundlapalli Adi V

Abstract excerpt

BACKGROUND: Natural Language Processing (NLP) systems can be used for specific Information Extraction (IE) tasks such as extracting phenotypic data from the electronic medical record (EMR). These data are useful for translational research and are often found only in free text clinical notes. A key required step for IE is the manual annotation of clinical corpora and the creation of a reference standard for (1)...

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Identifiers

PMID: 19761566
DOI: 10.1186/1471-2105-10-S9-S12
PMCID: PMC2745683

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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