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Article

Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design.

BMC bioinformatics - 12 Jun 2009

Field Helen I, Scollen Serena A, Luccarini Craig, Baynes Caroline, Morrison Jonathan, Dunning Alison M, Easton Douglas F, Pharoah Paul D P

Abstract excerpt

BACKGROUND: In moderate-throughput SNP genotyping there was a gap in the workflow, between choosing a set of SNPs and submitting their sequences to proprietary assay design software, which was not met by existing software. Retrieval and formatting of sequences flanking each SNP, prior to assay design, becomes rate-limiting for more than about ten SNPs, especially if annotated for repetitive regions and adjacent...

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PMID: 19523221
DOI: 10.1186/1471-2105-10-180
PMCID: PMC2711078

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

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