Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.

Genome biology - 1 Jan 2009

Kastenmüller Gabi, Schenk Maria Elisabeth, Gasteiger Johann, Mewes Hans-Werner

Abstract excerpt

Identifying the biochemical basis of microbial phenotypes is a main objective of comparative genomics. Here we present a novel method using multivariate machine learning techniques for comparing automatically derived metabolic reconstructions of sequenced genomes on a large scale. Applying our method to 266 genomes directly led to testable hypotheses such as the link between the potential of microorganisms to...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Archaea
Share to Artificial Intelligence
Share to Bacteria

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Bacterial

Share to Histidine

Share to Metabolic Networks and Pathways

Share to Methane

Share to Periodontal Diseases

Source

Open in PubMed Open full text

Identifiers

PMID: 19284550
DOI: 10.1186/gb-2009-10-3-r28
PMCID: PMC2690999

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.PMID 19284550Read ↗

Statistical prediction of microbial metabolic traits from genomes.Semantic proximity Read ↗

Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.Semantic proximity Read ↗

IDENTIFICATION AND ANALYSIS OF BACTERIAL GENOMIC METABOLIC SIGNATURES.Semantic proximity Read ↗

Statistical prediction of microbial metabolic traits from genomesSemantic proximity Read ↗

Automated high-quality reconstruction of metabolic networks from high-throughput dataSemantic proximity Read ↗

Sequence modeling tools to decode the biosynthetic diversity of the human microbiomeSemantic proximity Read ↗

METABOLIC: High-throughput Profiling of Microbial Genomes for Functional Traits, Biogeochemistry, and Community-scale Metabolic NetworksSemantic proximity Read ↗

CarveMe-GutMicrobes: Automated Metabolic Model Reconstruction for Gut Microbial Species and CommunitiesSemantic proximity Read ↗

Functional comparison of metabolic networks across species.Semantic proximity Read ↗

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel DiseasesSemantic proximity Read ↗

Functional Anabolic Network Analysis of Human-associated <i>Lactobacillus</i> StrainsSemantic proximity Read ↗

METABOLIC: High-throughput profiling of microbial genomes for functional traits, biogeochemistry, and community-scale metabolic networksSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.