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Article

Variable-number tandem repeats that are useful in genotyping isolates of Salmonella enterica subsp. enterica serovars Typhimurium and Newport.

Journal of clinical microbiology - 1 Nov 2006

Witonski D, Stefanova R, Ranganathan A, Schutze G E, Eisenach K D, Cave M D

Abstract excerpt

The genome of Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 was analyzed for direct repeats, and 54 sequences containing variable-number tandem repeat loci were identified. Ten primer pairs that anneal upstream and downstream of each selected locus were designed and used to amplify PCR targets in isolates of S. enterica serovars Typhimurium and Newport. Four of the 10 loci did not show...

Topics

Chromosome Mapping
Electrophoresis, Gel, Pulsed-Field
Genotype
Minisatellite Repeats
Polymerase Chain Reaction
Repetitive Sequences, Nucleic Acid
Salmonella typhimurium
Sequence Analysis, DNA

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 16943354
DOI: 10.1128/JCM.00469-06
PMCID: PMC1698354

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