Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.

Proteins - 1 Aug 2005

Carter Phil, Lesk Victor I, Islam Suhail A, Sternberg Michael J E

Abstract excerpt

In rounds 3-5 of CAPRI, the community-wide experiment on the comparative evaluation of protein-protein docking for structure prediction, we applied the 3D-Dock software package to predict the atomic structures of nine biophysical interactions. This approach starts with an initial grid-based shape complementarity search. The product of this is a large number of potential interacting conformations that are...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Protein
Share to Dimerization
Share to Macromolecular Substances

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Molecular Conformation

Share to Protein Interaction Mapping

Share to Proteomics

Share to Static Electricity

Share to Structural Homology, Protein

Source

Identifiers

PMID: 15981271
DOI: 10.1002/prot.20571

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.PMID 15981271Read ↗

Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.Semantic proximity Read ↗

Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.Semantic proximity Read ↗

Data-driven docking: HADDOCK's adventures in CAPRI.Semantic proximity Read ↗

Approaching the CAPRI challenge with an efficient geometry-based docking.Semantic proximity Read ↗

ATTRACT: protein-protein docking in CAPRI using a reduced protein model.Semantic proximity Read ↗

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.Semantic proximity Read ↗

Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55Semantic proximity Read ↗

Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55Semantic proximity Read ↗

Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47–55Semantic proximity Read ↗

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges.Semantic proximity Read ↗

Docking to single-domain and multiple-domain proteins: old and new challenges.Semantic proximity Read ↗

Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.