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Article

A web-based genotyping resource for viral sequences.

Nucleic acids research - 1 Jul 2004

Rozanov Mikhail, Plikat Uwe, Chappey Colombe, Kochergin Andrey, Tatusova Tatiana

Abstract excerpt

The Genotyping tool at the National Center for Biotechnology Information is a web-based program that identifies the genotype (or subtype) of recombinant or non-recombinant viral nucleotide sequences. It works by using BLAST to compare a query sequence to a set of reference sequences for known genotypes. Predefined reference genotypes exist for three major viral pathogens: human immunodeficiency virus 1 (HIV-1),...

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Identifiers

PMID: 15215470
DOI: 10.1093/nar/gkh419
PMCID: PMC441557

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