Protocol for the identification of selected genes and haplotype analysis in soybean using next-generation sequencing.

Abstract excerpt

Selected genes are genomic regions shaped by selection pressure and are often associated with important agronomic traits. Here, we present a protocol for identifying selected genes using genome resequencing data, followed by haplotype analysis of these genes. We describe steps for sequencing data collection and preprocessing, detection of genomic regions under selection, and haplotype construction based on...

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