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Pangenome Analysis Reveals Structural Variations Associated With Citric Acid Accumulation in Prunus mume.

Plant biotechnology journal - 1 Apr 2026

Huang Xiao, Lin Ximeng, Zhou Pengyu, Tan Wei, Gao Feng, Ni Zhaojun, Shi Ting, Bai Yang, Ma Chengdong, Ma Yufan, Li Minglu, Hayat Faisal, Zhang Qixiang, Tao Ryutaro, Wan Jianmin, Gao Zhihong

Abstract excerpt

Pangenome can reveal a large number of variations, providing a more comprehensive view of the genetic diversity of species that a single reference genome cannot surpass. Here, we assembled the haplotype telomere-to-telomere genome and 10 chromosome-level genomes, integrated with two previously reported genomes, and constructed a graph pangenome for P. mume with 'PmNH_Hap1' T2T genome as the reference. Core gene...

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PMID: 41440171
DOI: 10.1111/pbi.70518
PMCID: PMC13140591

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