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Pan-Genome Analysis Reveals Local Adaptation to Climate Driven by Introgression in Oak Species.

Molecular biology and evolution - 30 Apr 2025

Liang Yi-Ye, Liu Hui, Lin Qiong-Qiong, Shi Yong, Zhou Biao-Feng, Wang Jing-Shu, Chen Xue-Yan, Shen Zhao, Qiao Liang-Jing, Niu Jing-Wei, Ling Shao-Jun, Luo Wen-Ji, Zhao Wei, Liu Jian-Feng, Kuang Yuan-Wen, Ingvarsson Pär K, Guo Ya-Long, Wang Baosheng

Abstract excerpt

The genetic base of local adaptation has been extensively studied in natural populations. However, a comprehensive genome-wide perspective on the contribution of structural variants (SVs) and adaptive introgression to local adaptation remains limited. In this study, we performed de novo assembly and annotation of 22 representative accessions of Quercus variabilis, identifying a total of 543,372 SVs. These SVs...

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Topics

Quercus
Polymorphism, Single Nucleotide
Genome, Plant
Genetic Introgression
Adaptation, Physiological

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Climate

Genomic Structural Variation

Source

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Identifiers

PMID: 40235155
DOI: 10.1093/molbev/msaf088
PMCID: PMC12042805

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ERF

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