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Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus.

Genome research - 2 Jun 2025

Tam Rita, Möller Mareike, Luo Runpeng, Luo Zhenyan, Jones Ashley, Periyannan Sambasivam, Rathjen John P, Schwessinger Benjamin

Abstract excerpt

Phased telomere-to-telomere (T2T) genome assemblies are revolutionizing our understanding of long-hidden genome biology "dark matter" such as centromeres, rDNA repeats, inter-haplotype variation, and allele-specific expression (ASE), yet insights into dikaryotic fungi that separate their haploid genomes into distinct nuclei are limited. Here, we explore the impact of dikaryotism on the genome biology of a...

Topics

Alleles
Genome, Fungal
Evolution, Molecular
Centromere
Cell Nucleus
Retroelements
Genomics
Basidiomycota
Gene Expression Regulation, Fungal
Telomere

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 40216555
DOI: 10.1101/gr.280359.124
PMCID: PMC12129025

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