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Article

Web Visualization for Spatiotemporal Genomic Epidemiology, Annotation, and Mutation Dynamics of Orthohantavirus hantanense Using Nextstrain.

The American journal of tropical medicine and hygiene - 2 Apr 2025

Park Kyungmin, Kim Kijin, Kim Jongwoo, Noh Juyoung, Kim Seong-Gyu, Cho Hee-Kyung, Seo Ye-Rin, Kim Jin Il, Park Man-Seong, Kim Won-Keun, Song Jin-Won

Abstract excerpt

The phylogeographic inference approach aims to connect genomic data with epidemiology to understand the spread and evolution of pathogens using visualization of spatiotemporal reconstructions. Orthohantavirus hantanense (HTNV), the causative agent of hemorrhagic fever with renal syndrome (HFRS), represents a significant global public health concern. Here, we introduce a localized Nextstrain platform for HTNV,...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 39874598
DOI: 10.4269/ajtmh.24-0432
PMCID: PMC11965749

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