Haplotype-resolved genome assembly and resequencing analysis provide insights into genome evolution and allelic imbalance in Pinus densiflora.

doi:10.1038/s41588-024-01944-y

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Haplotype-resolved genome assembly and resequencing analysis provide insights into genome evolution and allelic imbalance in Pinus densiflora.

Nature genetics - 1 Nov 2024

Jang Min-Jeong, Cho Hye Jeong, Park Young-Soo, Lee Hye-Young, Bae Eun-Kyung, Jung Seungmee, Jin Hongshi, Woo Jongchan, Park Eunsook, Kim Seo-Jin, Choi Jin-Wook, Chae Geun Young, Guk Ji-Yoon, Kim Do Yeon, Kim Sun-Hyung, Kang Min-Jeong, Lee Hyoshin, Cheon Kyeong-Seong, Kim In Sik, Kim Yong-Min, Kim Myung-Shin, Ko Jae-Heung, Kang Kyu-Suk, Choi Doil, Park Eung-Jun, Kim Seungill

Abstract excerpt

Haplotype-level allelic characterization facilitates research on the functional, evolutionary and breeding-related features of extremely large and complex plant genomes. We report a 21.7-Gb chromosome-level haplotype-resolved assembly in Pinus densiflora. We found genome rearrangements involving translocations and inversions between chromosomes 1 and 3 of Pinus species and a proliferation of specific long...

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PMID: 39428511
DOI: 10.1038/s41588-024-01944-y

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