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Development and validation of a 5K low-density SNP chip for Hainan cattle.

BMC genomics - 18 Sept 2024

Wang Huan, Wu Hui, Zhang Wencan, Jiang Junming, Qian Hejie, Man Churiga, Gao Hongyan, Chen Qiaoling, Du Li, Chen Si, Wang Fengyang

Abstract excerpt

BACKGROUND: This study aimed to design and develop a 5K low-density liquid chip for Hainan cattle utilizing targeted capture sequencing technology. The chip incorporates a substantial number of functional single nucleotide polymorphism (SNP) loci derived from public literature, including SNP loci significantly associated with immunity, heat stress, meat quality, reproduction, and other traits. Additionally, SNPs...

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Cattle
Genotype
Oligonucleotide Array Sequence Analysis
Polymorphism, Single Nucleotide
Reproducibility of Results

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 39294563
DOI: 10.1186/s12864-024-10753-w
PMCID: PMC11409743

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