Genetic variation mining of the Chinese mitten crab (Eriocheir sinensis) based on transcriptome data from public databases.

doi:10.1093/bfgp/elae030

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Article

Genetic variation mining of the Chinese mitten crab (Eriocheir sinensis) based on transcriptome data from public databases.

Briefings in functional genomics - 6 Dec 2024

Xu Yuanfeng, Yu Fan, Feng Wenrong, Wei Jia, Su Shengyan, Li Jianlin, Hua Guoan, Li Wenjing, Tang Yongkai

Abstract excerpt

At present, public databases house an extensive repository of transcriptome data, with the volume continuing to grow at an accelerated pace. Utilizing these data effectively is a shared interest within the scientific community. In this study, we introduced a novel strategy that harnesses SNPs and InDels identified from transcriptome data, combined with sample metadata from databases, to effectively screen for...

Topics

Brachyura
Animals
Polymorphism, Single Nucleotide
Transcriptome
Female
Male
Databases, Genetic
Genome-Wide Association Study
Data Mining
INDEL Mutation
Genetic Variation

Source

Open in PubMed

Identifiers

PMID: 38984674
DOI: 10.1093/bfgp/elae030

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 30 Aug 2026.

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