Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia.

doi:10.1007/s11262-023-02048-1

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Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia.

Virus genes - 1 Apr 2024

Hakim Mohamad Saifudin, Gunadi, Rahayu Ayu, Wibawa Hendra, Eryvinka Laudria Stella, Supriyati Endah, Vujira Khanza Adzkia, Iskandar Kristy, Afiahayati, Daniwijaya Edwin Widyanto, Oktoviani Farida Nur, Annisa Luthvia, Utami Fadila Dyah Trie, Amadeus Verrell Christopher, Nurhidayah Setiani Silvy, Leksono Tiara Putri, Halim Fiqih Vidiantoro, Arguni Eggi, Nuryastuti Titik, Wibawa Tri

Abstract excerpt

During the Covid-19 pandemic, the resurgence of SARS-CoV-2 was due to the development of novel variants of concern (VOC). Thus, genomic surveillance is essential to monitor continuing evolution of SARS-CoV-2 and to track the emergence of novel variants. In this study, we performed phylogenetic, mutation, and selection pressure analyses of the Spike, nsp12, nsp3, and nsp5 genes of SARS-CoV-2 isolates circulating...

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PMID: 38244104
DOI: 10.1007/s11262-023-02048-1

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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