Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genomic Epidemiology of Salmonid Alphavirus in Norwegian Aquaculture Reveals Recent Subtype-2 Transmission Dynamics and Novel Subtype-3 Lineages.

Viruses - 20 Dec 2021

Macqueen Daniel J, Eve Oliver, Gundappa Manu Kumar, Daniels Rose Ruiz, Gallagher Michael D, Alexandersen Svein, Karlsen Marius

Abstract excerpt

Viral disease poses a major barrier to sustainable aquaculture, with outbreaks causing large economic losses and growing concerns for fish welfare. Genomic epidemiology can support disease control by providing rapid inferences on viral evolution and disease transmission. In this study, genomic epidemiology was used to investigate salmonid alphavirus (SAV), the causative agent of pancreas disease (PD) in Atlantic...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alphavirus
Share to Alphavirus Infections

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Aquaculture

Share to Fish Diseases

Share to Genetic Variation

Share to Genome, Viral

Share to Phylogeography

Share to Salmonidae

Source

Open in PubMed Open full text

Identifiers

PMID: 34960818
DOI: 10.3390/v13122549
PMCID: PMC8705410

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genomic Epidemiology of Salmonid Alphavirus in Norwegian Aquaculture Reveals Recent Subtype-2 Transmission Dynamics and Novel Subtype-3 Lineages.PMID 34960818Read ↗

Emergence of Salmonid Alphavirus Genotype 2 in Norway-Molecular Characterization of Viral Strains Circulating in Norway and Scotland.Semantic proximity Read ↗

Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway.Semantic proximity Read ↗

Genome-wide target enriched viral sequencing reveals extensive ‘hidden’ salmonid alphavirus diversity in farmed and wild fish populationsSemantic proximity Read ↗

Nanopore sequencing provides snapshots of the genetic variation within salmonid alphavirus-3 (SAV3) during an ongoing infection in Atlantic salmon (Salmo salar) and brown trout (Salmo trutta).Semantic proximity Read ↗

Nanopore whole genome sequencing and partitioned phylogenetic analysis supports a new salmonid alphavirus genotype (SAV7).Semantic proximity Read ↗

Whole genome sequencing reveals a novel <i>Renibacterium salmoninarum</i> lineage and suggests geographic endemism combined with anthropogenic spread in the North-East Atlantic areaSemantic proximity Read ↗

Natural infection of Atlantic salmon (Salmo salar L.) with salmonid alphavirus 3 generates numerous viral deletion mutants.Semantic proximity Read ↗

Nucleotide sequence variation in salmonid alphaviruses from outbreaks of salmon pancreas disease and sleeping disease.Semantic proximity Read ↗

Emergence and Spread of Piscine orthoreovirus Genotype 3Semantic proximity Read ↗

Genomic analysis reveals low genetic diversity and no continuous reintroduction of piscine myocarditis virus in farmed Atlantic salmon in the Faroe Islands.Semantic proximity Read ↗

Prevalence of piscine orthoreovirus and salmonid alphavirus in sea-caught returning adult Atlantic salmon (Salmo salar L.) in northern Norway.Semantic proximity Read ↗

First confirmation of salmonid alphavirus infection in Arctic char Salvelinus alpinus and in Austria.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.