Article
Nanopore whole genome sequencing and partitioned phylogenetic analysis supports a new salmonid alphavirus genotype (SAV7).
Diseases of aquatic organisms - 17 Dec 2020
Tighe Andrew J, Gallagher Michael D, Carlsson Jens, Matejusova Iveta, Swords Fiona, Macqueen Daniel J, Ruane Neil M
Abstract excerpt
Salmon pancreas disease virus, more commonly known as salmonid alphavirus (SAV), is a single-stranded positive sense RNA virus and the causative agent of pancreas disease and sleeping disease in salmonids. In this study, a unique strain of SAV previously isolated from ballan wrasse was subjected to whole genome sequencing using nanopore sequencing. In order to accurately examine the evolutionary history of this...
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