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Phylogenomics and antimicrobial resistance of Salmonella Typhi and Paratyphi A, B and C in England, 2016-2019.

Microbial genomics - 1 Aug 2021

Chattaway Marie Anne, Gentle Amy, Nair Satheesh, Tingley Laura, Day Martin, Mohamed Iman, Jenkins Claire, Godbole Gauri

Abstract excerpt

The emergence of antimicrobial resistance (AMR) to first- and second-line treatment regimens of enteric fever is a global public-health problem, and routine genomic surveillance to inform clinical and public-health management guidance is essential. Here, we present the prospective analysis of genomic data to monitor trends in incidence, AMR and travel, and assess hierarchical clustering (HierCC) methodology of...

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PMID: 34370659
DOI: 10.1099/mgen.0.000633
PMCID: PMC8549371

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