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Article

Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections.

DNA research : an international journal for rapid publication of reports on genes and genomes - 19 Jan 2021

Kajiya-Kanegae Hiromi, Nagasaki Hideki, Kaga Akito, Hirano Ko, Ogiso-Tanaka Eri, Matsuoka Makoto, Ishimori Motoyuki, Ishimoto Masao, Hashiguchi Masatsugu, Tanaka Hidenori, Akashi Ryo, Isobe Sachiko, Iwata Hiroyoshi

Abstract excerpt

We performed whole-genome Illumina resequencing of 198 accessions to examine the genetic diversity and facilitate the use of soybean genetic resources and identified 10 million single nucleotide polymorphisms and 2.8 million small indels. Furthermore, PacBio resequencing of 10 accessions was performed, and a total of 2,033 structure variants were identified. Genetic diversity and structure analysis congregated...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 33492369
DOI: 10.1093/dnares/dsaa032
PMCID: PMC7934572

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