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A Systematic Gene-Centric Approach to Define Haplotypes and Identify Alleles on the Basis of Dense Single Nucleotide Polymorphism Datasets.

The plant genome - 1 Nov 2019

Tardivel Aurélie, Torkamaneh Davoud, Lemay Marc-André, Belzile François, O'Donoughue Louise S

Abstract excerpt

CORE IDEAS: A gene-centric approach for haplotype definition was developed and implemented in R. The tool allows for allelic characterization at given loci in germplasm collections. Allelic status at four maturity genes is predicted on the basis of marker genotyping data. Assessing the allelic diversity within a germplasm collection and identifying individuals carrying favorable alleles is challenging. Advances...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 33016581
DOI: 10.3835/plantgenome2018.08.0061
PMCID: PMC12810027

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