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Accurate calling of homeoallelic genotypes of iSelect markers using inbred structured populations.

Bioinformatics (Oxford, England) - 1 Aug 2020

Shah Rohan, Keeble-Gagnère Gabriel, Whan Alex

Abstract excerpt

MOTIVATION: Genetic map construction is a foundational step in the analysis of structured experimental populations. For markers that hybridize to several genetically similar locations, or where several alleles are present (such as in multiparental populations), current methods often discard the marker or incorrectly call the genotypes. These errors result in information loss, or incorrect genotypes that can...

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PMID: 32374818
DOI: 10.1093/bioinformatics/btaa295

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