Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

GutLogo: Agent-based modeling framework to investigate spatial and temporal dynamics in the gut microbiome

9 Nov 2018

Abstract excerpt

Knowledge of the spatial and temporal dynamics of the gut microbiome is essential to understanding the state of human health, as over a hundred diseases have been correlated with changes in microbial populations. Unfortunately, due to the complexity of the microbiome and the limitations of in vivo and in vitro experiments, studying spatial and temporal dynamics of gut bacteria in a biological setting is extremely...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Gut microbiota and health
Share to Clostridium difficile and Clostridium perfringens research
Share to Gastrointestinal motility and disorders

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 30412640
DOI: 10.1371/journal.pone.0207072

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

GutLogo: Agent-based modeling framework to investigate spatial and temporal dynamics in the gut microbiomePMID 30412640Read ↗

Agent Based Modeling of Human Gut Microbiome Interactions and Perturbations.Semantic proximity Read ↗

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut MicrobiotaSemantic proximity Read ↗

Microbiome Modeling: A Beginner’s GuideSemantic proximity Read ↗

The Dimension of Time in Host-Microbiome InteractionsSemantic proximity Read ↗

Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communitiesSemantic proximity Read ↗

Process-based modelling of microbial community dynamics in the human colonSemantic proximity Read ↗

The dynamic microbiomeSemantic proximity Read ↗

Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolismSemantic proximity Read ↗

Bioengineering approaches to simulate human colon microbiome ecosystemSemantic proximity Read ↗

Dynamic linear models guide design and analysis of microbiota studies within artificial human gutsSemantic proximity Read ↗

MiGut: a scalable <i>in vitro</i> platform for simulating the human gut microbiome – development, validation, and simulation of antibiotic induced dysbiosisSemantic proximity Read ↗

Effect of water flow and chemical environment on microbiota growth and composition in the human colonSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.