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Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Senecavirus A evolution.

Microbial pathogenesis - 1 Nov 2017

Chen Ye, Xu Quanming, Tan Chen, Li Xinxin, Chi Xiaojuan, Cai Binxiang, Yu Ziding, Ma Yanmei, Chen Ji-Long

Abstract excerpt

Senecavirus A (SVA) infection was recently confirmed in pigs in Brazil, United States of America and Canada. To better understand the molecular characteristics of isolated SVA genomes, we first reported genome-wide comprehensive analyses of codon usage and various factors that have contribute to the molecular evolution in SVA. The effective number of codons (ENC) ranged from 54.51 to 55.54 with an average of...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 28943149
DOI: 10.1016/j.micpath.2017.09.040
PMCID: PMC7172466

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