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Article

Revisiting the genotyping scheme for varicella-zoster viruses based on whole-genome comparisons.

The Journal of general virology - 1 Jun 2017

Jensen Nancy J, Rivailler Pierre, Tseng Hung Fu, Quinlivan Mark L, Radford Kay, Folster Jennifer, Harpaz Rafael, LaRussa Philip, Jacobsen Steven, Scott Schmid D

Abstract excerpt

We report whole-genome sequences (WGSs) for four varicella-zoster virus (VZV) samples from a shingles study conducted by Kaiser Permanente of Southern California. Comparative genomics and phylogenetic analysis of all published VZV WGSs revealed that strain KY037798 is in clade IX, which shall henceforth be designated clade 9. Previously published single nucleotide polymorphisms (SNP)-based genotyping schemes fail...

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Identifiers

PMID: 28613146
DOI: 10.1099/jgv.0.000772
PMCID: PMC5721928

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