Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A Novel Cylindrical Representation for Characterizing Intrinsic Properties of Protein Sequences.

Journal of chemical information and modeling - 22 Jun 2015

Yu Jia-Feng, Dou Xiang-Hua, Wang Hong-Bo, Sun Xiao, Zhao Hui-Ying, Wang Ji-Hua

Abstract excerpt

The composition and sequence order of amino acid residues are the two most important characteristics to describe a protein sequence. Graphical representations facilitate visualization of biological sequences and produce biologically useful numerical descriptors. In this paper, we propose a novel cylindrical representation by placing the 20 amino acid residue types in a circle and sequence positions along the z...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Amino Acid Sequence
Share to Computational Biology

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Computer Graphics

Share to Mutation

Share to NADH Dehydrogenase

Share to Proteins

Source

Identifiers

PMID: 25945398
DOI: 10.1021/ci500577m

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A Novel Cylindrical Representation for Characterizing Intrinsic Properties of Protein Sequences.PMID 25945398Read ↗

A normalized differential sequence feature encoding method based on amino acid sequencesSemantic proximity Read ↗

Euclidian space and grouping of biological objects.Semantic proximity Read ↗

Solving the protein sequence metric problem.Semantic proximity Read ↗

2D Similarity Map of Multiple Coronavirus Gene SequencesSemantic proximity Read ↗

Alignment-free comparison of genome sequences by a new numerical characterization.Semantic proximity Read ↗

Reconstructing phylogenetic tree using a protein-protein interaction technique.Semantic proximity Read ↗

A Novel Method of Characterizing Genetic Sequences: Genome Space with Biological Distance and ApplicationsSemantic proximity Read ↗

A graph-theoretical approach to DNA similarity analysisSemantic proximity Read ↗

The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform.Semantic proximity Read ↗

Construction of amino acids reduced alphabets from molecular descriptors for interpretation of N-carbamylase, luciferase and PI3K mutations.Semantic proximity Read ↗

The Topological Properties of the Protein UniverseSemantic proximity Read ↗

A novel algorithm for detecting multiple covariance and clustering of biological sequences.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.