Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets.

BMC research notes - 8 Sept 2014

Sarovich Derek S, Price Erin P

Abstract excerpt

BACKGROUND: Next-generation sequencing (NGS) is now a commonplace tool for molecular characterisation of virtually any species of interest. Despite the ever-increasing use of NGS in laboratories worldwide, analysis of whole genome re-sequencing (WGS) datasets from start to finish remains nontrivi...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genome
Share to Haploidy
Share to Phylogeny

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Source

Open in PubMed Open full text

Identifiers

PMID: 25201145
DOI: 10.1186/1756-0500-7-618
PMCID: PMC4169827

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-25201145-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets.PMID 25201145Read ↗

ReSeqTools: an integrated toolkit for large-scale next-generation sequencing based resequencing analysis.Semantic proximity Read ↗

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for next-generation sequencing dataSemantic proximity Read ↗

Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping.Semantic proximity Read ↗

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses.Semantic proximity Read ↗

RES-Scanner: a software package for genome-wide identification of RNA-editing sitesSemantic proximity Read ↗

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.Semantic proximity Read ↗

FermiKit: assembly-based variant calling for Illumina resequencing data.Semantic proximity Read ↗

Aquila_stLFR: diploid genome assembly based structural variant calling package for stLFR linked-readSemantic proximity Read ↗

De novo diploid genome assembly using long noisy reads.Semantic proximity Read ↗

Fast and accurate DNASeq Variant Calling workflow composed of LUSH toolkitSemantic proximity Read ↗

NGSTroubleFinder: A tool for detection and quantification of contamination and kinship across human NGS dataSemantic proximity Read ↗

Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.