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Identification and characterization of nucleotide variations in the genome of Ziziphus jujuba (Rhamnaceae) by next generation sequencing.

Molecular biology reports - 1 May 2014

Ma Qiuyue, Feng Kai, Yang Wanxu, Chen Yingnan, Yu Faxin, Yin Tongming

Abstract excerpt

In this study, single-nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) in the genome of Ziziphus jujuba were identified using sequences generated by the Roche 454 GS-FLX sequencer. A total of, 573,141 reads were produced with an average read length of 360 bp. After quality control, 258,754 of the filtered reads were assembled into 23,864 contigs, and 293,458 remained as singletons. Using the...

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PMID: 24477589
DOI: 10.1007/s11033-014-3184-8

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