Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

De novo sequencing and a comprehensive analysis of purple sweet potato (Impomoea batatas L.) transcriptome.

Planta - 1 Jul 2012

Xie Fuliang, Burklew Caitlin E, Yang Yanfang, Liu Min, Xiao Peng, Zhang Baohong, Qiu Deyou

Abstract excerpt

High-throughput RNA sequencing was performed for comprehensively analyzing the transcriptome of the purple sweet potato. A total of 58,800 unigenes were obtained and ranged from 200 nt to 10,380 nt with an average length of 476 nt. The average expression of one unigene was 34 reads per kb per million reads (RPKM) with a maximum expression of 1,935 RPKM. At least 40,280 (68.5%) unigenes were identified to be...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Anthocyanins
Share to Gene Library
Share to Genes, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Glucosyltransferases

Share to Ipomoea batatas

Share to Pigments, Biological

Share to RNA, Plant

Share to Transcriptome

Source

Identifiers

PMID: 22270559
DOI: 10.1007/s00425-012-1591-4

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

De novo sequencing and a comprehensive analysis of purple sweet potato (Impomoea batatas L.) transcriptome.PMID 22270559Read ↗

De novo sequencing and comprehensive analysis of the mutant transcriptome from purple sweet potato (Ipomoea batatas L.).Semantic proximity Read ↗

Comparative Transcriptome Analysis of White and Purple Potato to Identify Genes Involved in Anthocyanin Biosynthesis.Semantic proximity Read ↗

Genetic diversity assessment and genome-wide association study reveal candidate genes associated with component traits in sweet potato (Ipomoea batatas (L.) Lam).Semantic proximity Read ↗

Transcript profiling for regulation of sweet potato skin color in Sushu8 and its mutant Zhengshu20.Semantic proximity Read ↗

A comparative transcriptome analysis of a wild purple potato and its red mutant provides insight into the mechanism of anthocyanin transformation.Semantic proximity Read ↗

De novo transcriptome assembly of pummelo and molecular marker development.Semantic proximity Read ↗

High-throughput deep sequencing reveals the important role that microRNAs play in the salt response in sweet potato (Ipomoea batatas L.).Semantic proximity Read ↗

eQTL mapping of the 12S globulin cruciferin gene PGCRURSE5 as a novel candidate associated with starch content in potato tubers.Semantic proximity Read ↗

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don.Semantic proximity Read ↗

Genome-Wide Association Study of Sweet Potato Storage Root Traits Using GWASpoly, a Gene Dosage-Sensitive Model.Semantic proximity Read ↗

Antioxidant Activity of Phenolic Extraction from Different Sweetpotato (Ipomoea batatas (L.) Lam.) Blades and Comparative Transcriptome Analysis Reveals Differentially Expressed Genes of Phenolic Metabolism in Two Genotypes.Semantic proximity Read ↗

De novo assembly and transcriptome analysis of contrasting sugarcane varieties.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.