Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

doi:10.1093/nar/gkr1138

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Article

Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

Nucleic acids research - 1 Apr 2012

Ruwe Hannes, Schmitz-Linneweber Christian

Abstract excerpt

Chloroplast RNA metabolism is controlled and excecuted by hundreds of nuclear-encoded, chloroplast-localized RNA binding proteins. Contrary to the nucleo-cytosolic compartment or bacteria, there is little evidence for non-coding RNAs that play a role as riboregulators of chloroplasts. We mined deep-sequencing datasets to identify short (16-28 nt) RNAs in the chloroplast genome and found 50 abundant small RNAs...

Topics

Arabidopsis
Arabidopsis Proteins
Base Sequence
Binding Sites
Chloroplasts
Codon, Initiator
Conserved Sequence
High-Throughput Nucleotide Sequencing
Molecular Sequence Data
Mutation
Oryza

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Plant Proteins

RNA, Chloroplast

RNA, Plant

RNA, Small Untranslated

RNA-Binding Proteins

Sequence Analysis, RNA

Sequence Homology, Nucleic Acid

Source

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Identifiers

PMID: 22139936
DOI: 10.1093/nar/gkr1138
PMCID: PMC3326302

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