Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Mining and characterizing microsatellites from citrus ESTs.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik - 1 May 2006

Chen Chunxian, Zhou Ping, Choi Young A, Huang Shu, Gmitter Fred G

Abstract excerpt

Freely available computer programs were arranged in a pipeline to extract microsatellites from public citrus EST sequences, retrieved from the NCBI. In total, 3,278 bi- to hexa-type SSR-containing sequences were identified from 56,199 citrus ESTs. On an average, one SSR was found per 5.2 kb of EST sequence, with the tri-nucleotide motifs as the most abundant. Primer sequences flanking SSR motifs were successfully...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Citrus
Share to Computers
Share to Crosses, Genetic

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to DNA, Plant

Share to Expressed Sequence Tags

Share to Genes, Plant

Share to Software

Share to Software Design

Source

Identifiers

PMID: 16474971
DOI: 10.1007/s00122-006-0226-1

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Mining and characterizing microsatellites from citrus ESTs.PMID 16474971Read ↗

Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis).Semantic proximity Read ↗

Mining of haplotype-based expressed sequence tag single nucleotide polymorphisms in citrus.Semantic proximity Read ↗

Development of genic SSR markers from transcriptome sequencing of pear buds.Semantic proximity Read ↗

Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus.Semantic proximity Read ↗

Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping.Semantic proximity Read ↗

An evaluation of sequence tagged microsatellite site markers for genetic analysis within Citrus and related species.Semantic proximity Read ↗

Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas).Semantic proximity Read ↗

Development of EST-SSR markers for genetic diversity analysis in coconut (Cocos nucifera L.).Semantic proximity Read ↗

Identification and development of polymorphic EST-SSR markers by sequence alignment in pepper, Capsicum annuum (Solanaceae).Semantic proximity Read ↗

Twelve polymorphic microsatellite loci from the Asian citrus psyllid, Diaphorina citri Kuwayama, the vector for citrus greening disease, huanglongbingSemantic proximity Read ↗

A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping.Semantic proximity Read ↗

Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.