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Article

The Emerging JEV Genotype 5 Exhibits Distinct Codon Usage Characteristics.

Pathogens (Basel, Switzerland) - 7 Jan 2026

Gu Xiaoyu, Wang Ruichen, Yang Yuhong, Zhang Weijia, Yin Qikai, Nie Kai, Fu Shihong, Cui Qianqian, Li Fan, Wang Huanyu, Xu Songtao

Abstract excerpt

This study investigates the codon usage characteristics of Japanese encephalitis virus (JEV) genotype 5 (G5). Based on 339 complete JEV genome sequences, we systematically compared the codon usage patterns of G5 with other genotypes (G1-G4) using a multi-faceted approach, including evolutionary analysis, nucleotide composition, Relative Synonymous Codon Usage (RSCU), Principal Component Analysis (PCA), Effective...

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Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

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Identifiers

PMID: 41599042
DOI: 10.3390/pathogens15010058
PMCID: PMC12844922

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GC

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