A new lineage nomenclature to aid genomic surveillance of dengue virus.

doi:10.1371/journal.pbio.3002834

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Article

A new lineage nomenclature to aid genomic surveillance of dengue virus.

PLoS biology - 1 Sept 2024

Hill Verity, Cleemput Sara, Pereira James Siqueira, Gifford Robert J, Fonseca Vagner, Tegally Houriiyah, Brito Anderson F, Ribeiro Gabriela, de Souza Vinicius Carius, Brcko Isabela Carvalho, Ribeiro Igor Santana, De Lima Iago Trezena Tavares, Slavov Svetoslav Nanev, Sampaio Sandra Coccuzzo, Elias Maria Carolina, Tran Vi Thuy, Kien Duong Thi Hue, Huynh Tuyen, Yacoub Sophie, Dieng Idrissa, Salvato Richard, Wallau Gabriel Luz, Gregianini Tatiana S, Godinho Fernanda M S, Vogels Chantal B F, Breban Mallery I, Leguia Mariana, Jagtap Suraj, Roy Rahul, Hapuarachchi Chanditha, Mwanyika Gaspary, Giovanetti Marta, Alcantara Luiz C J, Faria Nuno R, Carrington Christine V F, Hanley Kathryn A, Holmes Edward C, Dumon Wim, Lima Alex Ranieri Jerônimo, Oliveira Tulio de, Grubaugh Nathan D

Abstract excerpt

Dengue virus (DENV) is currently causing epidemics of unprecedented scope in endemic settings and expanding to new geographical areas. It is therefore critical to track this virus using genomic surveillance. However, the complex patterns of viral genomic diversity make it challenging to use the existing genotype classification system. Here, we propose adding 2 sub-genotypic levels of virus classification, named...

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PMID: 39283942
DOI: 10.1371/journal.pbio.3002834
PMCID: PMC11426435

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