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DIRT/µ: automated extraction of root hair traits using combinatorial optimization.

Journal of experimental botany - 10 Jan 2025

Pietrzyk Peter, Phan-Udom Neen, Chutoe Chartinun, Pingault Lise, Roy Ankita, Libault Marc, Saengwilai Patompong Johns, Bucksch Alexander

Abstract excerpt

As with phenotyping of any microscopic appendages, such as cilia or antennae, phenotyping of root hairs has been a challenge due to their complex intersecting arrangements in two-dimensional images and the technical limitations of automated measurements. Digital Imaging of Root Traits at Microscale (DIRT/μ) is a newly developed algorithm that addresses this issue by computationally resolving intersections and...

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PMID: 39269014
DOI: 10.1093/jxb/erae385
PMCID: PMC11714758

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