Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.

doi:10.2807/1560-7917.ES.2024.29.23.2300542

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Community

Back to search

Article

Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin - 1 Jun 2024

Frank Olga, Balboa David Acitores, Novatchkova Maria, Özkan Ezgi, Strobl Marcus Martin, Yelagandula Ramesh, Albanese Tanino Guiseppe, Endler Lukas, Amman Fabian, Felsenstein Vera, Gavrilovic Milanka, Acosta Melanie, Patocka Timothej, Vogt Alexander, Tamir Ido, Klikovits Julia, Zoufaly Alexander, Seitz Tamara, Födinger Manuela, Bergthaler Andreas, Indra Alexander, Schmid Daniela, Klimek Peter, Stark Alexander, Allerberger Franz, Benka Bernhard, Reich Katharina, Cochella Luisa, Elling Ulrich

Abstract excerpt

BackgroundThe COVID-19 pandemic was largely driven by genetic mutations of SARS-CoV-2, leading in some instances to enhanced infectiousness of the virus or its capacity to evade the host immune system. To closely monitor SARS-CoV-2 evolution and resulting variants at genomic-level, an innovative pipeline termed SARSeq was developed in Austria.AimWe discuss technical aspects of the SARSeq pipeline, describe its...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Austria

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to COVID-19

Share to Evolution, Molecular

Share to Genome, Viral

Share to Genomics

Share to Pandemics

Share to SARS-CoV-2

Share to Whole Genome Sequencing

Source

Open in PubMed Open full text

Identifiers

PMID: 38847119
DOI: 10.2807/1560-7917.ES.2024.29.23.2300542
PMCID: PMC11158012

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.PMID 38847119Read ↗

Global SARS-CoV-2 genomic surveillance: What we have learned (so far).Semantic proximity Read ↗

A program for real-time surveillance of SARS-CoV-2 geneticsSemantic proximity Read ↗

Mutational dynamics and transmission properties of SARS-CoV-2 superspreading events in AustriaSemantic proximity Read ↗

Systematic Genomic Surveillance of SARS-CoV-2 Virus on Illumina Sequencing Platforms in the Slovak Republic—One Year ExperienceSemantic proximity Read ↗

Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance programSemantic proximity Read ↗

A program for real-time surveillance of SARS-CoV-2 genetics.Semantic proximity Read ↗

Tracking the prevalence and emergence of SARS CoV2 variants of concern using a regional genomic surveillance programSemantic proximity Read ↗

Evolution of SARS-CoV-2 Key Mutations in Vienna Detected by Large Scale Screening Program.Semantic proximity Read ↗

Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2.Semantic proximity Read ↗

Identification of SARS-CoV-2 variants using viral sequencing for the Centers for Disease Control and Prevention genomic surveillance programSemantic proximity Read ↗

In silico genomic surveillance by CoVerage predicts and characterizes SARS-CoV-2 Variants of InterestSemantic proximity Read ↗

Molecular epidemiology of SARS-CoV-2 - a regional to global perspectiveSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.