Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Isoform-resolved genome annotation enables mapping of tissue-specific betalain regulation in amaranth.

The New phytologist - 1 Aug 2024

Winkler Tom S, Vollmer Susanne K, Dyballa-Rukes Nadine, Metzger Sabine, Stetter Markus G

Abstract excerpt

Betalains are coloring pigments produced in some families of the order Caryophyllales, where they replace anthocyanins as coloring pigments. While the betalain pathway itself is well studied, the tissue-specific regulation of the pathway remains mostly unknown. We enhance the high-quality Amaranthus hypochondriacus reference genome and produce a substantially more complete genome annotation, incorporating isoform...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Anthocyanins
Share to Flowers
Share to Genes, Plant

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genome, Plant

Share to Molecular Sequence Annotation

Share to Organ Specificity

Share to Pigmentation

Share to Protein Isoforms

Source

Identifiers

PMID: 38584577
DOI: 10.1111/nph.19736

Genes

MYB

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Isoform-resolved genome annotation enables mapping of tissue-specific betalain regulation in amaranth.PMID 38584577Read ↗

Unraveling GhMYB102: A Dual-Function of the Gh_A01G069800 Gene in Promoting Anthocyanin Biosynthesis Inhibition, and Drought Tolerance in CottonSemantic proximity Read ↗

Genetic factors explaining anthocyanin pigmentation differences.Semantic proximity Read ↗

Regulatory role of miR319a and functional validation of its target gene ArMYB33 in leaf color change of Acer rubrum.Semantic proximity Read ↗

Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport.Semantic proximity Read ↗

The draft genome and transcriptome of Amaranthus hypochondriacus: a C4 dicot producing high-lysine edible pseudo-cereal.Semantic proximity Read ↗

Allelic variation and light-responsive regulation of FaMYB10-2 underlie tissue-specific anthocyanin accumulation in strawberry.Semantic proximity Read ↗

MYBA From Blueberry (Vaccinium Section Cyanococcus) Is a Subgroup 6 Type R2R3MYB Transcription Factor That Activates Anthocyanin ProductionSemantic proximity Read ↗

Genetic analysis of the liverwort Marchantia polymorpha reveals that R2R3MYB activation of flavonoid production in response to abiotic stress is an ancient character in land plants.Semantic proximity Read ↗

Transposon-mediated mutation of CYP76AD3 affects betalain synthesis and produces variegated flowers in four o'clock (Mirabilis jalapa).Semantic proximity Read ↗

A R2R3-MYB, VwMYB1, regulates anthocyanin biosynthesis in pansy petal blotch via transcriptional activation of VwF3'5'H.Semantic proximity Read ↗

The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly.Semantic proximity Read ↗

Integrated Transcriptomic and Metabolomic Analyses Reveal the Regulatory Drivers of Anthocyanin-Mediated Leaf Color Variation in Liquidambar formosana.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.